Merge requests · official JGI workflows / wdl-tasks

Merge trains

upgrade testing image to latest versions

!27 · created Feb 14, 2023 by Will Holtz
updated Feb 16, 2023
Add WDLs for Trinity RNA assembly

!26 · created Feb 13, 2023 by Will Holtz
updated Mar 01, 2023
filter out expected pytest warnings

!25 · created Jan 13, 2023 by Will Holtz
- Merged
- 1
updated Jan 18, 2023
add generate_md5sums.sh script and docs

!24 · created Jan 10, 2023 by Will Holtz
- Merged
- 1
updated Jan 18, 2023
Draft: Resolve "bbtools suite" 0 of 8 checklist items completed

!23 · created Jan 10, 2023 by Edward Steven Kirton
- Closed
- 2
updated Mar 24, 2023
CheckV WDL-Task 8 of 8 checklist items completed

!22 · created Jan 10, 2023 by Chienchi Lo
WDL_task
- Merged
- 2
updated Mar 09, 2023
Resolve "add hmmsearch"

!21 · created Jan 09, 2023 by Edward Steven Kirton
updated Jan 10, 2023
Resolve "convert task-folders to use miniwdl tests instead of cromwell" 0 of 8 checklist items completed

!20 · created Dec 21, 2022 by Jeff L Froula
- Merged
- 1
updated Jan 06, 2023
Reformat fq_count tests to match README.md

!19 · created Dec 09, 2022 by Will Holtz
updated Dec 21, 2022
doc: improvements to miniwdl calls

!18 · created Dec 08, 2022 by Will Holtz
updated Dec 21, 2022
ci: ensure pytest not called with empty dir array

!17 · created Dec 02, 2022 by Will Holtz
updated Dec 21, 2022
enhancements to run_test.sh for local testing

!16 · created Dec 02, 2022 by Will Holtz
updated Dec 21, 2022
update fq_count task and add tests

!15 · created Nov 19, 2022 by Will Holtz
- Merged
updated Nov 28, 2022
create ci/cd pipeline that only tests changed tasks 0 of 8 checklist items completed

!14 · created Nov 03, 2022 by Jeff L Froula
updated Nov 28, 2022
busco pytest working 6 of 8 checklist items completed

!13 · created Nov 02, 2022 by Jeff L Froula
updated Nov 02, 2022
Liftoff 6 of 8 checklist items completed

!12 · created Nov 01, 2022 by Tomas Bruna
updated Nov 02, 2022
Resolve "quast" 4 of 8 checklist items completed

!11 · created Nov 01, 2022 by Leo Baumgart
updated Dec 21, 2022
Resolve "Mummer4 task" 4 of 8 checklist items completed

!10 · created Nov 01, 2022 by Will Holtz
updated Dec 21, 2022
Draft: Resolve "test - 1" 0 of 8 checklist items completed

!9 · created Nov 01, 2022 by Daniela Cassol
- Closed
updated Nov 02, 2022
Update .gitlab/merge_request_templates/MERGE_REQUEST_TEMPLATE.md

!8 · created Nov 01, 2022 by Daniela Cassol
updated Nov 01, 2022