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The IMG Annotation Pipeline (IMGAP) is used for structural and functional annotation of prokaryotic genomes, metagenomes and metatranscriptomes submitted to the DOE Joint Genome Institute's IMG system.
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Code supporting genome assembly and analysis of small Eukaryotes, fungi, algae, organelles.
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Recreates the phyloDist steps of the isolates pipeline using the JAWS infrastructure, with a few QOL improvements as well.
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These are WDL examples that are used by the JAWS tutorials in the jaws-docs.readthedocs.io.
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sblast portion of the IMG isolates pipeline, reworked to use the JAWS infrastructure
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The inhomo3 portion of the Isolate Pipeline, but recreating using WDL infrastructure and Docker containers.
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