Commits · main · JGI Synbio Public / synbioqc-libqc

Mar 26, 2025
- Removed unnecessary JAWS_TEAM env variable · eea77568
  Michael Sharkey authored 2 months ago
  
  eea77568
Sep 03, 2024
- Upped memory from 2G to 10G for task generate_excel · 95bdafc4
  Michael Sharkey authored 8 months ago
  
  95bdafc4
Jul 11, 2024
- Update README.md · ec1e5afe
  Lisa Simirenko authored 10 months ago
  
  ec1e5afe
- Update README.md · cc435469
  Lisa Simirenko authored 10 months ago
  
  cc435469
Jan 09, 2024
- fix typo · 9fbff79a
  Angela Kollmer authored 1 year ago
  
  9fbff79a
- poll jaws for download status · 0777cc1d
  Angela Kollmer authored 1 year ago
  
  0777cc1d
Jan 08, 2024
- PPS-6717 ensure runtime_minutes specified for all WDL tasks · 3f71cc2d
  Duncan N Scott authored 1 year ago
  
  3f71cc2d
- format WDL · 580161f7
  Duncan N Scott authored 1 year ago
  
  580161f7
Dec 21, 2023
- use WDL with sha images · 664a9312
  Duncan N Scott authored 1 year ago
  
  664a9312
Dec 20, 2023
- update WDL to use new runtime param runtime_minutes and to use image doejgi/synbioqc-libqc:0.7.0 · 52e364d8
  Duncan N Scott authored 1 year ago
  
  View commits for tag 0.7.0 0.7.0
  
  52e364d8
- set simple limit on hi-res bin rows · 905d0111
  Duncan N Scott authored 1 year ago
  
  905d0111
- fiddling with hires bin size · 4af8591a
  Duncan N Scott authored 1 year ago
  
  4af8591a
- added test generate_excel_miseq.sh · c193cb3d
  Duncan N Scott authored 1 year ago
  
  c193cb3d
- trim excel test files · f3f0f2a4
  Duncan N Scott authored 1 year ago
  
  f3f0f2a4
- PPS-6689 : make WDL scripts tolerant of Excel generation error · fe5a9b48
  Duncan N Scott authored 1 year ago
  
  fe5a9b48
- PPS-6689 : added call-generate_excel Cromwell dir for problematic miseq run · ab408883
  Duncan N Scott authored 1 year ago
  
  ab408883
- added NovaSeqTest.xlsx · c25aa2ee
  Duncan N Scott authored 1 year ago
  
  c25aa2ee
Dec 19, 2023
- PPS-6668 download jaws outputs when run fails · cc93101e
  Duncan N Scott authored 1 year ago
  
  cc93101e
Oct 21, 2023
- only set jaws-site if it is not set · d9e68619
  Duncan N Scott authored 1 year ago
  
  d9e68619
- chmod output dir · 18520f78
  Duncan N Scott authored 1 year ago
  
  18520f78
Oct 20, 2023
- PPS-6664 ensure that all files in output directory are group writeable · 29f87d24
  Duncan N Scott authored 1 year ago
  
  29f87d24
Oct 12, 2023
- remove depcrecated --verbose flag from jaws status requests · f71d1b90
  Duncan N Scott authored 1 year ago
  
  f71d1b90
Oct 11, 2023
- ignore egg-info · 77b79a27
  Duncan N Scott authored 1 year ago
  
  77b79a27
- use --copies when creating venv · d11de20b
  Duncan N Scott authored 1 year ago
  
  d11de20b
Oct 10, 2023
- publish image to doejgi · bc0eb2b9
  Duncan N Scott authored 1 year ago
  
  View commits for tag 0.6.2 0.6.2
  
  bc0eb2b9
Oct 09, 2023
- updated Gitlab CI/CD · b3a86701
  Duncan N Scott authored 1 year ago
  
  View commits for tag 0.6.1 0.6.1
  
  b3a86701
Sep 22, 2023
- output invocation · 477ed6f0
  Duncan N Scott authored 1 year ago
  
  477ed6f0
Sep 21, 2023
- update usage.sh to list -n argument · 7bb260b5
  Duncan N Scott authored 1 year ago
  
  7bb260b5
- updated install.sh · 1bf2085f
  Duncan N Scott authored 1 year ago
  
  1bf2085f
Sep 19, 2023
- collect jaws outpus working · 05e1cb24
  Duncan N Scott authored 1 year ago
  
  05e1cb24
- debug collecting jaws outputs · ead837bc
  Duncan N Scott authored 1 year ago
  
  ead837bc
- debug collect jaws outputs · ab2e5745
  Duncan N Scott authored 1 year ago
  
  ab2e5745
- set +x to debug · 042f7980
  Duncan N Scott authored 1 year ago
  
  042f7980
- fix collection of jaws outputs · 80b0dad0
  Duncan N Scott authored 1 year ago
  
  80b0dad0
- remove test data, pre-pripeline files created in prep dir (not conf), inputs... · 230d4251
  Duncan N Scott authored 1 year ago
  230d4251
- make output directory structure consistent with that of other synbioqc pipelines · a5fc702b
  Duncan N Scott authored 1 year ago
  
  a5fc702b
Sep 15, 2023
- clean-up · f0bd8b9f
  Duncan N Scott authored 1 year ago
  
  View commits for tag results results
  
  f0bd8b9f
- do not copy JAWS output from run id · 8d8b331b
  Duncan N Scott authored 1 year ago
  
  8d8b331b
- jaws site permutter at nersc · 05229a85
  Duncan N Scott authored 1 year ago
  
  05229a85
- debug · 6e331e4a
  Duncan N Scott authored 1 year ago
  
  6e331e4a