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JGI Synbio Public
synbioqc-dual_barcode
Commits
1392b60e
Unverified
Commit
1392b60e
authored
1 year ago
by
Duncan Scott
Browse files
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update docker tag
parent
cbc23d79
Branches
Branches containing commit
Tags
1.3.1
Tags containing commit
No related merge requests found
Pipeline
#45341
passed
1 year ago
Stage: download
Stage: build
Changes
3
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1
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3 changed files
app/wdl/dbc_pool.wdl
+5
-10
5 additions, 10 deletions
app/wdl/dbc_pool.wdl
app/wdl/dbc_pool_barcode.wdl
+3
-8
3 additions, 8 deletions
app/wdl/dbc_pool_barcode.wdl
app/wdl/dbc_pools.wdl
+4
-8
4 additions, 8 deletions
app/wdl/dbc_pools.wdl
with
12 additions
and
26 deletions
app/wdl/dbc_pool.wdl
+
5
−
10
View file @
1392b60e
...
...
@@ -149,8 +149,7 @@ task merge_barcode {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 2
memory: "16G"
time: "01:00:00"
...
...
@@ -214,8 +213,7 @@ task intersect_barcodes_ultraplex {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 1
memory: "1G"
time: "01:00:00"
...
...
@@ -255,8 +253,7 @@ task merge_barcode_files {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 1
memory: "1G"
time: "01:00:00"
...
...
@@ -285,8 +282,7 @@ task ultraplex {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 2
memory: "16G"
time: "01:00:00"
...
...
@@ -317,8 +313,7 @@ task generate_barcodes {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 1
memory: "8G"
time: "01:00:00"
...
...
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Click to expand it.
app/wdl/dbc_pool_barcode.wdl
+
3
−
8
View file @
1392b60e
...
...
@@ -106,8 +106,7 @@ task index {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 4
memory: "32G"
time: "01:00:00"
...
...
@@ -189,8 +188,6 @@ task gatk {
}
runtime {
#docker: "broadinstitute/gatk3@sha256:5ecb139965b86daa9aa85bc531937415d9e98fa8a6b331cb2b05168ac29bc76b"
#docker: "broadinstitute/gatk3@sha256:5ecb139965b86daa9aa85bc531937415d9e98fa8a6b331cb2b05168ac29bc76b"
cpu: 4
memory: "32G"
time: "01:00:00"
...
...
@@ -230,8 +227,7 @@ task analyze_variants {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 1
memory: "16G"
time: "01:00:00"
...
...
@@ -260,8 +256,7 @@ task bcftools {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 2
memory: "16G"
time: "01:00:00"
...
...
This diff is collapsed.
Click to expand it.
app/wdl/dbc_pools.wdl
+
4
−
8
View file @
1392b60e
...
...
@@ -78,8 +78,7 @@ task pool_library_tsv {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 1
memory: "8G"
time: "01:00:00"
...
...
@@ -157,8 +156,7 @@ task summarize {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 1
memory: "8G"
time: "01:00:00"
...
...
@@ -182,8 +180,7 @@ task create_references_fasta {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 1
memory: "8G"
time: "01:00:00"
...
...
@@ -206,8 +203,7 @@ task create_references_fai_dict {
}
runtime {
#docker: "dnscott66/synbioqc-dual_barcode@sha256:dcfe6ad7e53567165ad39e0c96237afdcfaad3d9d35a4d60978cc947f22d0bbe"
docker: "dnscott66/synbioqc-dual_barcode:1.3.0"
docker: "dnscott66/synbioqc-dual_barcode:1.3.1"
cpu: 2
memory: "16G"
time: "01:00:00"
...
...
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