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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Group-level bashrc file on Dori cluster for Genome Analysis Group

Configuration for the Chrome extension Proxy SwitchyOmega

A set of shell functions for use in CI/CD pipelines.

A set of docker images that can be useful for the development and testing of WDL pipelines.

Spack configuration to build software and module for use on Dori cluster

IMG annotation pipeline. It is the central repo for NMDC, IMG and the Advanced Analysis group. The following WDL was derived (and maintained by) Marcel Huntemann's pipeline.