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CLI for JAWS users

metagenome/metatranscriptome assembly and reporting code

De-novo transcriptome assembly from RNA-seq data using Trinity

Code supporting genome assembly and analysis of small Eukaryotes, fungi, algae, organelles.

The IMG Annotation Pipeline (IMGAP) is used for structural and functional annotation of prokaryotic genomes, metagenomes and metatranscriptomes submitted to the DOE Joint Genome Institute's IMG system.

The inhomo3 portion of the Isolate Pipeline, but recreating using WDL infrastructure and Docker containers.

Analysis of DAP-Seq experiments