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spacersDB / docs
GNU General Public License v3.0 or laterUpdated -
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JGI Synbio Public / synbioqc-pbj
Lawrence Berkeley National Labs BSD variant licenseSynthetic biology team's WDL based pipeline for validation of PacBio sequence.
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JGI Synbio Public / synbioqc-dual_barcode
Lawrence Berkeley National Labs BSD variant licenseThe synbioqc-pbj pipeline altered for running the qc pipeline on reference sequences that have been barcoded prior to the PacBio barcoding and adapter additions, so these must be demultiplexed prior to the qc analysis.
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JGI Synbio Public / synbioqc-libqc
Lawrence Berkeley National Labs BSD variant licenseSynbio team miseq short read validation.
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RolyPoly / Main
GNU General Public License v3.0 or laterRNA virus analysis toolkit, including a variety of commands and wrappers for external tools (from raw read processing to genome annotation).
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spacersDB / Spacer Matching Bench
MIT LicenseUpdated -
Code supporting genome assembly and analysis of small Eukaryotes, fungi, algae, organelles.
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Advanced Analysis / JAWS / jaws-client
Lawrence Berkeley National Labs BSD variant licenseCLI for JAWS users
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Simon Roux / SpacerExtractor
GNU General Public License v3.0 or laterUpdated -
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RolyPoly / RolyRS
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Antonio Pedro Castello Branco Rocha Camargo / SpacerExtractor
GNU General Public License v3.0 or laterUpdated