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Code supporting genome assembly and analysis of small Eukaryotes, fungi, algae, organelles.

metagenome/metatranscriptome assembly and reporting code

CLI for JAWS users

The IMG Annotation Pipeline (IMGAP) is used for structural and functional annotation of prokaryotic genomes, metagenomes and metatranscriptomes submitted to the DOE Joint Genome Institute's IMG system.

De-novo transcriptome assembly from RNA-seq data using Trinity

Recreates the phyloDist steps of the isolates pipeline using the JAWS infrastructure, with a few QOL improvements as well.