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Code supporting genome assembly and analysis of small Eukaryotes, fungi, algae, organelles.
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Advanced Analysis / JAWS / jaws-client
Lawrence Berkeley National Labs BSD variant licenseCLI for JAWS users
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Uri Neri / RolyPoly
GNU General Public License v3.0 or laterUpdated -
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De-novo transcriptome assembly from RNA-seq data using Trinity
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Simon Roux / SpacerExtractor
GNU General Public License v3.0 or laterUpdated -
Uri Neri / SpacerExtractor
GNU General Public License v3.0 or laterUpdated -
Uri Neri / Spacer Matching Bench
MIT LicenseUpdated -
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JGI Synbio Public / synbioqc-libqc
Lawrence Berkeley National Labs BSD variant licenseSynbio team miseq short read validation.
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JGI Synbio Public / synbioqc-dual_barcode
Lawrence Berkeley National Labs BSD variant licenseThe synbioqc-pbj pipeline altered for running the qc pipeline on reference sequences that have been barcoded prior to the PacBio barcoding and adapter additions, so these must be demultiplexed prior to the qc analysis.
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Advanced Analysis - Restore 03252025 / JAWS / jaws-client
Lawrence Berkeley National Labs BSD variant licenseCLI for JAWS users
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