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De-novo transcriptome assembly from RNA-seq data using Trinity

These are WDL examples that are used by the JAWS tutorials in the jaws-docs.readthedocs.io.

An attempt to create a series of wrapper scripts that will submit to jaws, continually check to see if the run has succeeded, and then gatherFiles afterwards.

IMG annotation pipeline. It is the central repo for NMDC, IMG and the Advanced Analysis group. The following WDL was derived (and maintained by) Marcel Huntemann's pipeline.

Synbio team miseq short read validation.