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Updated date
Python retrieve
!44
· created
Jun 09, 2023
by
Will Holtz
Merged
updated
Jun 09, 2023
fix reference to bbtools_stats output
!43
· created
Jun 09, 2023
by
Will Holtz
Merged
updated
Jun 09, 2023
strip newlines in when reading bb_stats
!42
· created
Jun 08, 2023
by
Will Holtz
Merged
updated
Jun 08, 2023
remove incorrect cut from out_file
!41
· created
Jun 08, 2023
by
Will Holtz
Merged
updated
Jun 08, 2023
fix out_file bash function
!40
· created
Jun 08, 2023
by
Will Holtz
Merged
updated
Jun 08, 2023
fix bugs in retrieve script
!39
· created
Jun 08, 2023
by
Will Holtz
Merged
updated
Jun 08, 2023
Fix closing quote in trans_asm.py
!38
· created
Jun 08, 2023
by
Will Holtz
Merged
updated
Jun 08, 2023
typo in retreive script
!37
· created
Jun 08, 2023
by
Will Holtz
Merged
updated
Jun 08, 2023
rework ref genome fetch to use apid
!36
· created
Jun 08, 2023
by
Will Holtz
Merged
updated
Jun 08, 2023
fix path to LIBRARIES in inputs.json
!35
· created
Jun 06, 2023
by
Will Holtz
Merged
updated
Jun 06, 2023
convert Path to str before writing inputs.json
!34
· created
Jun 06, 2023
by
Will Holtz
Merged
updated
Jun 06, 2023
setup to populate metadata WDL input
!33
· created
Jun 06, 2023
by
Will Holtz
Merged
updated
Jun 06, 2023
add retries to requests with backoff
!32
· created
Jun 05, 2023
by
Will Holtz
Merged
updated
Jun 05, 2023
more robust handling of metadata
!31
· created
Jun 05, 2023
by
Will Holtz
Merged
updated
Jun 05, 2023
handle no module case
!30
· created
Jun 03, 2023
by
Will Holtz
Merged
updated
Jun 03, 2023
move submit script to python
!29
· created
Jun 03, 2023
by
Will Holtz
Merged
updated
Jun 03, 2023
reorder setup steps, retrieve ref genome
!28
· created
Jun 02, 2023
by
Will Holtz
Merged
updated
Jun 02, 2023
don't write jaws_run_id if submit fails
!27
· created
Jun 02, 2023
by
Will Holtz
Merged
updated
Jun 02, 2023
fasta output named after organism
!26
· created
Jun 01, 2023
by
Will Holtz
Merged
updated
Jun 01, 2023
Add ap_tool to finalize
!25
· created
Jun 01, 2023
by
Will Holtz
Merged
updated
Jun 01, 2023
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