Merge requests · User Support Analysis / rna-assembly

Merge trains

refactor: simplify and fix rqc_asm_notes.sh

!67 · created Jul 06, 2023 by Will Holtz
- Merged
updated Jul 06, 2023
feat: improve trans_asm.py add rqc_asm_notes.sh

!66 · created Jul 06, 2023 by Will Holtz
- Merged
updated Jul 06, 2023
fix: enhanced python loading on perlmutter

!65 · created Jul 06, 2023 by Will Holtz
- Merged
updated Jul 06, 2023
None lib

!64 · created Jul 06, 2023 by Will Holtz
- Merged
updated Jul 06, 2023
fix: module purge on perlmutter

!63 · created Jul 05, 2023 by Will Holtz
- Merged
updated Jul 05, 2023
fix: allow missing transcriptome ref

!62 · created Jul 05, 2023 by Will Holtz
- Merged
updated Jul 05, 2023
pull in reference transcriptome and calculate accuracy stats

!61 · created Jul 05, 2023 by Will Holtz
- Merged
updated Jul 05, 2023
fix: pass /tmp to mktemp

!60 · created Jun 27, 2023 by Will Holtz
- Merged
updated Jun 27, 2023
feat: output all jgi_acc.pl outputs

!59 · created Jun 27, 2023 by Will Holtz
- Merged
updated Jun 27, 2023
feat: stage to temp for Trinity tasks

!58 · created Jun 26, 2023 by Will Holtz
- Merged
updated Jun 26, 2023
ci: fix existing tests and add them to CI

!57 · created Jun 22, 2023 by Will Holtz
- Merged
updated Jun 23, 2023
fix: override Trinity --version return code

!56 · created Jun 16, 2023 by Will Holtz
- Merged
updated Jun 16, 2023
feat: use doejgi/jamo-dori for jat import

!55 · created Jun 15, 2023 by Will Holtz
- Merged
updated Jun 15, 2023
feat: trans_asm directly executable

!54 · created Jun 12, 2023 by Will Holtz
- Merged
updated Jun 12, 2023
fix: get create_jat_metadata working

!53 · created Jun 12, 2023 by Will Holtz
- Merged
updated Jun 12, 2023
fix: escape percent in PROC_FILE

!52 · created Jun 12, 2023 by Will Holtz
- Merged
updated Jun 12, 2023
fix: bad string insertion syntax

!51 · created Jun 12, 2023 by Will Holtz
- Merged
updated Jun 12, 2023
fix: set a default trinity version in outputs

!50 · created Jun 10, 2023 by Will Holtz
- Merged
updated Jun 10, 2023
fix: add optional key for outputs.json

!49 · created Jun 10, 2023 by Will Holtz
- Merged
updated Jun 10, 2023
ci: use pre-commit, get passing

!48 · created Jun 10, 2023 by Will Holtz
- Merged
updated Jun 10, 2023