Merge requests · User Support Analysis / rna-assembly

Merge trains

ci: add shellcheck to nox

!87 · created Jul 14, 2023 by Will Holtz
- Merged
updated Jul 14, 2023
ci: configure python code testing

!86 · created Jul 14, 2023 by Will Holtz
- Merged
updated Jul 14, 2023
feat: add setup switch to include pacbio

!85 · created Jul 14, 2023 by Will Holtz
- Merged
updated Jul 14, 2023
refactor: use containers.py in setup.py

!84 · created Jul 13, 2023 by Will Holtz
- Merged
updated Jul 13, 2023
fix: move ref ungzip directory

!83 · created Jul 12, 2023 by Will Holtz
- Merged
updated Jul 12, 2023
feat: ungzip references in setup

!82 · created Jul 12, 2023 by Will Holtz
- Merged
updated Jul 12, 2023
add assembly_stats task and update generate_md5sums.sh

!81 · created Jul 12, 2023 by Will Holtz
- Merged
updated Jul 12, 2023
ci: do not allow commits to master

!80 · created Jul 12, 2023 by Will Holtz
- Merged
updated Jul 12, 2023
fix: trans_acc edge cases

!79 · created Jul 12, 2023 by Will Holtz
- Merged
updated Jul 12, 2023
fix: finalize logs to working dir

!78 · created Jul 12, 2023 by Will Holtz
- Merged
updated Jul 12, 2023
fix: parsing of acc.log into asm_notes

!77 · created Jul 11, 2023 by Will Holtz
- Merged
updated Jul 11, 2023
fix: fix quoting in trans_acc.sh

!76 · created Jul 11, 2023 by Will Holtz
- Merged
updated Jul 11, 2023
fix: remove {{REPO_PATH}} from finalize

!75 · created Jul 10, 2023 by Will Holtz
- Merged
updated Jul 10, 2023
ci: deploy submodules too

!74 · created Jul 07, 2023 by Will Holtz
- Merged
updated Jul 07, 2023
feat: update jamo-report

!73 · created Jul 07, 2023 by Will Holtz
- Merged
updated Jul 07, 2023
feat: update jamo-report

!72 · created Jul 07, 2023 by Will Holtz
- Closed
updated Jul 07, 2023
feat: update jamo-report

!71 · created Jul 07, 2023 by Will Holtz
- Merged
updated Jul 07, 2023
fix: strip stats column names

!70 · created Jul 07, 2023 by Will Holtz
- Merged
updated Jul 07, 2023
jat_metadata.json renamed to metadata.json

!69 · created Jul 06, 2023 by Will Holtz
- Merged
updated Jul 06, 2023
feat: add rqc_create_jat_metadata

!68 · created Jul 06, 2023 by Will Holtz
- Merged
updated Jul 06, 2023