redundant task

It looks like the trna.gff file is getting created twice.

This code is in the trnascan-se_trnas.sh script which is run in the trnascan.wdl:task trnascan_ba.

106 out_gff="${input_fasta%_*}_trna.gff"
107 echo "$(date +%F_%T) - Picking best results now and creating gff..."
108 $(dirname $0)/trna_pick_and_transform_to_gff.py ${input_fasta%_*}_trnascan_* > $out_gff

However, this task seems to be creating the same file `trnascan.wdl:task pick_and_transform_to_gff.

trna_pick_and_transform_to_gff.py ${bacterial_out} ${archaeal_out} > ${project_id}_trna.gff

where

File bacterial_out = "${project_id}_trnascan_bacterial.out"
File archaeal_out  = "${project_id}_trnascan_archaeal.out"