Tags

Tags give the ability to mark specific points in history as being important

4.3.0

a7df620e · Enforce a java version that works with the JAWS womtool check - updated image · Jun 13, 2026
4.2.0

890544bd · bug fix - image updated · May 15, 2026
4.1.0

b0191768 · Fixed issue when exiting early due to intermittent pacbio API 500 status · Apr 16, 2026
4.0.0

745fa3ab · Put guardrails up on some potential issues · Apr 10, 2026
v3.14.0_tagged_with_v_to_avoid_cicd

ba8906c3 · Replace CCQC with in-WDL cross-contamination analysis · Apr 01, 2026
v3.13.0_tagged_with_v_to_avoid_cicd

36c8fdaf · Fix CCQC pipeline: CSV input, multi-barcode dedup, Docker 3.4.5, and recovery · Mar 16, 2026
v3.12.0_tagged_with_v_to_avoid_cicd

7b258695 · Add CCQC post-processing: contamination summary, original-pair filtering, and recovery support · Mar 12, 2026
v3.11.0_tagged_with_v_to_avoid_cicd

57b77b25 · Add --single-ref-align mode, fix BAM header overflow, and improve large-dataset handling · Mar 03, 2026
v3.10.0_tagged_with_v_to_avoid_cicd

d210ab01 · Centralize FASTA validation, improve JAWS error handling, and extend pipeline recovery · Feb 25, 2026
v3.9.0_tagged_with_v_to_avoid_cicd

1cc6e0a2 · added more output when waiting for libraries · Feb 24, 2026
v3.8.0_tagged_with_v_to_avoid_cicd

8203fd1a · Add --include-libraries flag to filter specific libraries within a pool · Feb 19, 2026
v3.7.0_tagged_with_v_to_avoid_cicd

d8eb54e5 · Fix samtools merge "too many open files" error with batched merging · Feb 07, 2026
v3.6.0_tagged_with_v_to_avoid_cicd

a5933045 · Fixed issue calling unsupported pacbio API endpoint · Jan 16, 2026
v3.5.0_tagged_with_v_to_avoid_cicd

15518291 · Added optional pool mapping file command line arg · Dec 10, 2025
3.4.2

a7185fc4 · update docker image version · Aug 14, 2025
3.4.1

6ce46b92 · Having the artifact expire in 1 hour so the secure files aren't persisted and viewable for long · Aug 06, 2025
3.4.0

d32ce81a · Merge branch 'DAP_dev' into 'main' · Aug 05, 2025
3.3.3

c685dccd · Changes based on feedback from Dani and Daniel · Feb 26, 2025

3.3.2

199fadd6 · Update README.md · May 07, 2024

version 3.3.2 moved project to jgi-synbio-public

3.3.1

1afa74b8 · use docker:20.10.24 for CI/CD · Oct 10, 2023
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3.3.1
```