reducing number of subworkflow tasks

The main consequence of updating to version 1.0 is inputs.json needs an update.

As of version 1.0 of the wdl spec, there is no direct way to get an array of Map keys. This will become available in version 1.1. As a workaround for now, you can use the Pair data type instead of Map as follows:

• draft-2

{
  "dbc_pools.poolFastq": {
    "pool1": "/global/dna/dm_archive/sdm/pacbio/00/25/44/pbio-2544.25022.bc1001_BAK8A_OA--bc1001_BAK8A_OA.ccs.fastq.gz",
    "pool2": "/global/dna/dm_archive/sdm/pacbio/00/25/44/pbio-2544.25023.bc1002_BAK8A_OA--bc1002_BAK8A_OA.ccs.fastq.gz"
  },
}

• Version 1.0

{
  "dbc_pools.poolFastq": [
    {"Left": "pool1", 
    "Right": "/global/dna/dm_archive/sdm/pacbio/00/25/44/pbio-2544.25022.bc1001_BAK8A_OA--bc1001_BAK8A_OA.ccs.fastq.gz"},
    {"Left": "pool2",
    "Right":  "/global/dna/dm_archive/sdm/pacbio/00/25/44/pbio-2544.25023.bc1002_BAK8A_OA--bc1002_BAK8A_OA.ccs.fastq.gz"}
  ],
}

@DNScott